Publications

Thank you to all my coauthors! 😍

2022

E. Zaunseder, S. Haupt, U. MĂŒtze, S. Garbade, S. Kölker, V. Heuveline: Opportunities and challenges in machine learning‐based newborn screening—A systematic literature review. JIMD Reports, March 2022
DOI: 10.1002/jmd2.12285
Podcast

2021

S. Haupt, N. Gleim, A. Ahadova, H. BlÀker, M. Knebel Doeberitz, M. Kloor, V. Heuveline: A computational model for investigating the evolution of colonic crypts during Lynch syndrome carcinogenesis. Computational and Systems Oncology, June 2021
DOI: 10.1002/cso2.1020
CodebioRxiv
S. Haupt, A. Zeilmann, A. Ahadova, H. BlÀker, M. von Knebel Doeberitz, M. Kloor, V. Heuveline: Mathematical modeling of multiple pathways in colorectal carcinogenesis using dynamical systems with Kronecker structure. PLOS Computational Biology, May 2021
DOI: 10.1371/journal.pcbi.1008970
Blog PostPubMedbioRxiv

2020

S. Haupt, N. Gleim, A. Ahadova, H. BlÀker, M. von Knebel Doeberitz, M. Kloor, V. Heuveline: A computational model for investigating the evolution of colonic crypts during Lynch syndrome carcinogenesis. bioRxiv, December 2020. Preprint
DOI: 10.1101/2020.12.29.424555
CodePublished Version
A. Ballhausen, M. Przybilla, M. Jendrusch, S. Haupt, E. Pfaffendorf, F. Seidler, J. Witt, A. Hernandez Sanchez, K. Urban, M. Draxlbauer, S. Krausert, A. Ahadova, M. Kalteis, P. Pfuderer, D. Heid, D. Stichel, J. Gebert, M. Bonsack, S. Schott, H. BlÀker, T. SeppÀlÀ, J. Mecklin, S. Ten Broeke, M. Nielsen, V. Heuveline, J. Krzykalla, A. Benner, A. Riemer, M. von Knebel Doeberitz, M. Kloor: The shared frameshift mutation landscape of microsatellite-unstable cancers suggests immunoediting during tumor evolution. Nature Communications, September 2020
DOI: 10.1038/s41467-020-18514-5
PubMedbioRxiv
H. BlĂ€ker, S. Haupt, M. Morak, E. Holinski‐Feder, A. Arnold, D. Horst, J. Sieber‐Frank, F. Seidler, M. Winterfeld, E. Alwers, J. Chang‐Claude, H. Brenner, W. Roth, C. Engel, M. Löffler, G. Möslein, H. Schackert, J. Weitz, C. Perne, S. Aretz, R. HĂŒneburg, W. Schmiegel, D. Vangala, N. Rahner, V. Steinke‐Lange, V. Heuveline, M. von Knebel Doeberitz, A. Ahadova, M. Hoffmeister, M. Kloor, The German Consortium for Familial Intestinal Cancer: Age-dependent performance of BRAF mutation testing in Lynch syndrome diagnostics. International Journal of Cancer, September 2020
DOI: 10.1002/ijc.33273
PubMedmedRxiv
S. Haupt, A. Zeilmann, A. Ahadova, M. von Knebel Doeberitz, M. Kloor, V. Heuveline: Mathematical Modeling of Multiple Pathways in Colorectal Carcinogenesis using Dynamical Systems with Kronecker Structure. bioRxiv, August 2020. Preprint
DOI: 10.1101/2020.08.14.250175
Published Version

2019

H. BlĂ€ker, S. Haupt, M. Morak, E. Holinski-Feder, A. Arnold, D. Horst, J. Sieber-Frank, F. Seidler, M. von Winterfeld, E. Alwers, J. Chang-Claude, H. Brenner, W. Roth, C. Engel, M. Löffler, G. Möslein, H. Schackert, J. Weitz, C. Perne, S. Aretz, R. HĂŒneburg, W. Schmiegel, D. Vangala, N. Rahner, V. Steinke-Lange, V. Heuveline, M. von Knebel Doeberitz, A. Ahadova, M. Hoffmeister, M. Kloor, the German Consortium for Familial Intestinal Cancer: BRAF mutation testing of MSI CRCs in Lynch syndrome diagnostics: performance and efficiency according to patient's age. medRxiv, October 2019. Preprint
DOI: 10.1101/19009274
Published Version
A. Ballhausen, M. Przybilla, M. Jendrusch, S. Haupt, E. Pfaffendorf, M. Draxlbauer, F. Seidler, S. Krausert, A. Ahadova, M. Kalteis, D. Heid, J. Gebert, M. Bonsack, S. Schott, H. BlÀker, T. SeppÀlÀ, J. Mecklin, S. Broeke, M. Nielsen, V. Heuveline, J. Krzykalla, A. Benner, A. Riemer, M. von Knebel Doeberitz, M. Kloor: The shared neoantigen landscape of MSI cancers reflects immunoediting during tumor evolution. bioRxiv, July 2019. Preprint
DOI: 10.1101/691469
Published Version

2017

S. Gawlok, P. Gerstner, S. Haupt, V. Heuveline, J. Kratzke, P. Lösel, K. Mang, M. Schmidtobreick, N. Schoch, N. Schween, J. Schwegler, C. Song, M. Wlotzka: HiFlow3 – Technical Report on Release 2.0. Preprint Series of the Engineering Mathematics and Computing Lab, November 2017
DOI: 10.11588/EMCLPP.2017.06.42879